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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUGP1SURP and G-patch domain containing 1. (655 aa)    
Predicted Functional Partners:
dhx15
DEAH-box helicase 15.
   
 0.994
rbm17
RNA binding motif protein 17.
   
 
 0.973
ENSCHAP00000004933
U2 small nuclear RNA auxiliary factor 2a.
    
 
 0.944
LOC105902020
Splicing factor U2AF 65 kDa subunit-like.
    
 
 0.944
ENSCHAP00000027239
annotation not available
    
 
 0.903
ENSCHAP00000036895
RNA binding motif protein 10.
   
 0.887
ENSCHAP00000041368
RNA binding motif protein 6.
   
 0.887
rbm5
RNA binding motif protein 5.
   
 0.887
ENSCHAP00000010176
Splicing factor 1.
   
 0.791
ENSCHAP00000002421
DEAQ box RNA-dependent ATPase 1.
   
 0.789
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.