close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps26aVPS26, retromer complex component A. (328 aa)    
Predicted Functional Partners:
vps29
VPS29 retromer complex component.
   
 0.999
ENSCHAP00000035722
TBC1 domain family, member 5.
   
 0.993
vps26b
VPS26, retromer complex component B.
  
 
0.990
ENSCHAP00000030749
Sorting nexin 27a.
   
 0.987
ENSCHAP00000040336
annotation not available
   
 0.987
ENSCHAP00000042675
Sorting nexin 2.
   
 0.982
ENSCHAP00000052483
Sorting nexin 1a.
   
 0.982
snx3
Sorting nexin 3.
    
 0.977
ENSCHAP00000059726
Sorting nexin 1b.
   
 0.976
snx5
Sorting nexin 5.
    
 0.971
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.