STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105912404C-X-C chemokine receptor type 4-like. (359 aa)    
Predicted Functional Partners:
LOC105905820
Stromal cell-derived factor 1-like.
   
 0.958
ENSCHAP00000037993
annotation not available
   
 0.922
ENSCHAP00000057752
annotation not available
   
 0.922
cxcl14
C-X-C motif chemokine ligand 14.
    
 0.914
ENSCHAP00000019568
annotation not available
    
 0.913
LOC105906491
C-C motif chemokine 19-like.
   
 0.904
LOC105908661
Atypical chemokine receptor 3-like.
    
0.901
ackr3
Atypical chemokine receptor 3.
    
0.901
ENSCHAP00000049482
Chemokine (C-X-C motif) ligand 8a.
   
 
 0.892
gna12
G protein subunit alpha 12.
    
 0.892
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.