STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007013Cadherin 6. (806 aa)    
Predicted Functional Partners:
cdh22
Cadherin 22.
  
 
 
0.794
ENSCHAP00000048031
Cadherin 5.
  
  
 
0.777
ENSCHAP00000012685
Cadherin 13, H-cadherin (heart).
     
0.773
ENSCHAP00000025324
annotation not available
    
 0.760
CTNNB1
Catenin beta 1.
    
 0.760
ENSCHAP00000010671
Junction plakoglobin a.
    
 0.753
ENSCHAP00000030901
Junction plakoglobin b.
    
 0.753
ENSCHAP00000027800
Catenin (cadherin-associated protein), alpha 1.
    
 0.741
ctnna2
Catenin alpha 2.
    
 0.741
CDH18-2
Cadherin 18.
  
0.715
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.