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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hacd33-hydroxyacyl-CoA dehydratase 3. (374 aa)    
Predicted Functional Partners:
tecr
trans-2,3-enoyl-CoA reductase.
   
 0.963
LOC105889329
Very-long-chain enoyl-CoA reductase-like.
   
 0.963
LOC105910973
Very-long-chain enoyl-CoA reductase-like.
   
 0.963
ENSCHAP00000034941
trans-2,3-enoyl-CoA reductase-like 2b.
   
 0.958
LOC105906694
Very-long-chain 3-oxoacyl-CoA reductase-like.
   
 0.940
ENSCHAP00000031673
Hydroxysteroid (17-beta) dehydrogenase 12a.
   
 0.940
ENSCHAP00000061794
Hydroxysteroid (17-beta) dehydrogenase 12b.
   
 0.938
SKP1
S-phase kinase-associated protein 1-like.
    
 0.889
ENSCHAP00000052411
S-phase kinase-associated protein 1.
    
 0.889
LOC105911564
Elongation of very long chain fatty acids protein 5-like.
   
 0.850
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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