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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007121Ring finger protein 150a. (428 aa)    
Predicted Functional Partners:
ENSCHAP00000030857
annotation not available
    
 0.784
rps27a
Ribosomal protein S27a.
    
 0.719
ENSCHAP00000007633
OTU deubiquitinase, ubiquitin aldehyde binding 1b.
   
 0.709
trip12
Thyroid hormone receptor interactor 12.
     
 0.619
ENSCHAP00000009019
annotation not available
   
0.605
ENSCHAP00000045730
Zinc finger, AN1-type domain 4.
   
 0.599
ube2z
Ubiquitin conjugating enzyme E2 Z.
    
 0.583
ENSCHAP00000022879
UBX domain protein 7.
   
   0.572
LGR5
Leucine rich repeat containing G protein-coupled receptor 5.
    
 0.561
lgr4
Leucine rich repeat containing G protein-coupled receptor 4.
    
 0.561
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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