STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007184Lysine (K)-specific demethylase 6B, b. (1926 aa)    
Predicted Functional Partners:
atp5f1d
ATP synthase F1 subunit delta.
  
 0.998
atp5f1a
methyl-CpG-binding domain protein 2-like.
  
 0.998
ENSCHAP00000004284
Retinoblastoma binding protein 5.
    
 0.997
atp5f1c
ATP synthase F1 subunit gamma.
  
 0.997
ENSCHAP00000034369
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.997
atp5pd
ATP synthase peripheral stalk subunit d.
   
 0.996
ENSCHAP00000043428
ATP synthase peripheral stalk-membrane subunit b.
   
 0.995
atp5po
ATP synthase peripheral stalk subunit OSCP.
  
 0.994
ENSCHAP00000027876
Mediator of DNA damage checkpoint 1.
    
 0.991
ruvbl1
RuvB like AAA ATPase 1.
 
 
 0.991
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.