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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007211Zgc:153372. (396 aa)    
Predicted Functional Partners:
ENSCHAP00000010211
Sigma non-opioid intracellular receptor 1.
   
 0.896
hsd17b7
Hydroxysteroid 17-beta dehydrogenase 7.
    
 0.880
ENSCHAP00000004017
Farnesyl-diphosphate farnesyltransferase 1.
   
 0.826
sc5d
sterol-C5-desaturase.
   
 
 0.778
eif2s3
Eukaryotic translation initiation factor 2 subunit gamma.
   
 0.767
trmt112
tRNA methyltransferase subunit 11-2.
   
 0.761
ENSCHAP00000004757
MAPK associated protein 1.
    
 0.760
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
 0.760
mlst8
MTOR associated protein, LST8 homolog.
   
 0.754
ENSCHAP00000036123
RPTOR independent companion of MTOR, complex 2 a.
    
 0.753
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.