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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vax2Ventral anterior homeobox 2. (310 aa)    
Predicted Functional Partners:
bsx
Brain specific homeobox.
   
 
0.727
ENSCHAP00000004435
Paired box 2a.
      
 0.453
LOC105902948
Homeobox protein SIX6-like.
   
 
 0.434
six6
SIX homeobox 6.
   
 
 0.434
six3
SIX homeobox 3.
   
 
 0.434
LOC105904121
Homeobox protein SIX3-like.
   
 
 0.434
ENSCHAP00000007659
Forkhead box A3.
    
 0.418
LOC105897039
Hepatocyte nuclear factor 3-beta-like.
    
 0.418
foxa1
Forkhead box A1.
    
 0.418
ENSCHAP00000012635
T-box transcription factor 5a.
     
 0.409
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.