STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mydgfMyeloid derived growth factor. (171 aa)    
Predicted Functional Partners:
ENSCHAP00000026362
Signal sequence receptor, delta.
   
  
 0.806
cope
Coatomer protein complex subunit epsilon.
   
  
 0.750
ENSCHAP00000016969
Solute carrier family 35 member B1.
   
    0.589
ENSCHAP00000010187
annotation not available
   
  
 0.527
ENSCHAP00000004633
Calreticulin 3b.
   
   0.517
ENSCHAP00000035341
Calreticulin.
   
   0.517
ENSCHAP00000007951
Prolyl 4-hydroxylase, beta polypeptide.
   
  
 0.503
sec61b
SEC61 translocon beta subunit.
   
    0.483
ENSCHAP00000028386
Thioredoxin domain containing 11.
   
  
 0.482
rpn1
Ribophorin I.
   
    0.480
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.