Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDK5RAP1CDK5 regulatory subunit associated protein 1. (607 aa)    
Predicted Functional Partners:
exosc3
Exosome component 3.
   
 
 0.987
exosc5
Exosome component 5.
   
   0.974
ENSCHAP00000058293
X-ray repair complementing defective repair in Chinese hamster cells 5.
    
   0.932
prpf40a
pre-mRNA processing factor 40 homolog A.
 
 
   0.824
cdk5
Cyclin dependent kinase 5.
      
 0.711
ENDOV
Endonuclease V.
  
 
 0.710
urod
Uroporphyrinogen decarboxylase.
  
 
 0.710
ENSCHAP00000037283
MMS19 homolog, cytosolic iron-sulfur assembly component.
   
 
 0.707
mto1
Mitochondrial tRNA translation optimization 1.
  
  
 0.675
ndufa8
NADH:ubiquinone oxidoreductase subunit A8.
      
 0.670
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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