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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDK5RAP1CDK5 regulatory subunit associated protein 1. (607 aa)    
Predicted Functional Partners:
exosc3
Exosome component 3.
    
 
 0.973
exosc5
Exosome component 5.
   
   0.955
prpf40a
pre-mRNA processing factor 40 homolog A.
 
 
   0.825
ENDOV
Endonuclease V.
  
 
 0.806
urod
Uroporphyrinogen decarboxylase.
  
 
 0.806
ENSCHAP00000026988
glutamyl-prolyl-tRNA synthetase 1.
  
  
 0.728
ENSCHAP00000037283
MMS19 homolog, cytosolic iron-sulfur assembly component.
   
 
 0.666
ENSCHAP00000006636
tRNA isopentenyltransferase 1.
  
  
 0.642
mrps9
Mitochondrial ribosomal protein S9.
  
  
 0.621
ENSCHAP00000018625
Si:dkey-145c18.3.
  
  
 0.613
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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