STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007400nudC nuclear distribution protein. (352 aa)    
Predicted Functional Partners:
ENSCHAP00000009160
RAN binding protein 2.
   
 
 0.983
pafah1b1
Platelet activating factor acetylhydrolase 1b regulatory subunit 1.
   
 0.975
ENSCHAP00000009030
annotation not available
    
 0.912
ENSCHAP00000037894
annotation not available
     
 0.896
rcc2
Regulator of chromosome condensation 2.
   
  0.867
ENSCHAP00000038251
Platelet-activating factor acetylhydrolase 1b, regulatory subunit 1b.
   
 0.867
dynlt1
Dynein light chain Tctex-type 1.
     
 0.865
clip2
CAP-Gly domain containing linker protein 2.
     
 0.860
ENSCHAP00000031615
Dynein, light chain, roadblock-type 1.
    
 0.860
KIF18A
Kinesin family member 18A.
     
 0.855
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.