STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105900982Ceramide synthase 1-like. (367 aa)    
Predicted Functional Partners:
acer3
Alkaline ceramidase 3.
    
 0.886
degs2
Delta 4-desaturase, sphingolipid 2.
   
 0.879
ENSCHAP00000008396
Sphingosine-1-phosphate phosphatase 1.
    
 0.875
LOC105897768
Sphingosine-1-phosphate phosphatase 1-like.
    
 0.875
SGPP2
Sphingosine-1-phosphate phosphatase 2.
    
 0.875
ENSCHAP00000005169
Sphingomyelin phosphodiesterase 2b.
     
 0.867
kdsr
3-ketodihydrosphingosine reductase.
     
 0.866
ENSCHAP00000051462
UDP-glucose ceramide glucosyltransferase.
     
 0.866
ENSCHAP00000004062
Phospholipid phosphatase 2a.
    
 0.861
asah2
N-acylsphingosine amidohydrolase 2.
     
 0.861
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.