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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007525CWC25 spliceosome associated protein homolog. (402 aa)    
Predicted Functional Partners:
ENSCHAP00000004711
annotation not available
   
 0.999
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 0.999
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.998
ENSCHAP00000048943
ISY1 splicing factor homolog.
   
 0.998
cdc40
Cell division cycle 40.
    
 0.998
dhx38
DEAH-box helicase 38.
    
 0.998
prpf19
pre-mRNA processing factor 19.
    
 0.997
prpf8
pre-mRNA processing factor 8.
    
 0.997
cdc5l
Cell division cycle 5 like.
    
 
 0.993
ENSCHAP00000032669
SYF2 pre-mRNA-splicing factor.
   
 0.993
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.