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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007541Transmembrane protein 222b. (183 aa)    
Predicted Functional Partners:
ENSCHAP00000046146
Small nuclear ribonucleoprotein polypeptide A.
 
      0.762
pdk3
Pyruvate dehydrogenase kinase 3.
   
 0.583
ENSCHAP00000019285
Branched chain ketoacid dehydrogenase kinase.
   
 0.583
ENSCHAP00000022696
Pyruvate dehydrogenase kinase, isozyme 2b.
   
 0.583
ENSCHAP00000032676
Pyruvate dehydrogenase kinase, isozyme 4.
   
 0.583
LOC105888906
Pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 2, mitochondrial-like.
   
 0.583
ENSCHAP00000059398
Pyruvate dehydrogenase kinase, isozyme 1.
   
 0.583
LOC105907910
CXXC-type zinc finger protein 1-like.
   
 
  0.506
ENSCHAP00000058152
annotation not available
   
 
  0.496
ENSCHAP00000058154
annotation not available
   
 
  0.496
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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