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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smg5SMG5 nonsense mediated mRNA decay factor. (1158 aa)    
Predicted Functional Partners:
ENSCHAP00000002570
Telomerase reverse transcriptase.
   
 0.991
smg7
SMG7 nonsense mediated mRNA decay factor.
   
0.984
ENSCHAP00000021500
SMG6 nonsense mediated mRNA decay factor.
   
0.975
ENSCHAP00000043784
annotation not available
   
 0.975
ENSCHAP00000045064
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.975
LOC105907049
Regulator of nonsense transcripts 1.
   
 0.941
ENSCHAP00000040423
annotation not available
   
 0.941
ENSCHAP00000026536
NOP10 ribonucleoprotein homolog (yeast).
     
 0.933
ENSCHAP00000011963
Apoptotic peptidase activating factor 1.
    
  0.920
ENSCHAP00000043280
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
 0.903
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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