STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007619annotation not available (584 aa)    
Predicted Functional Partners:
ENSCHAP00000015499
Ataxin 3.
    
 0.904
trnau1ap
tRNA selenocysteine 1 associated protein 1.
    
 
 0.900
atxn2
Ataxin 2.
    
 
0.897
nufip2
Nuclear FMR1 interacting protein 2.
    
 
 0.874
pabpc1
poly(A) binding protein cytoplasmic 1.
   
 
 0.866
PABPC3
poly(A) binding protein cytoplasmic 3.
   
 
 0.866
ENSCHAP00000046918
poly(A) binding protein, cytoplasmic 4 (inducible form).
   
 
 0.866
ENSCHAP00000035127
N(alpha)-acetyltransferase 38, NatC auxiliary subunit.
    
 
 0.843
snrpb
Small nuclear ribonucleoprotein polypeptides B and B1.
    
 
 0.843
ENSCHAP00000057360
annotation not available
    
 
 0.843
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.