Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007626Si:dkey-5n18.1. (221 aa)    
Predicted Functional Partners:
ENSCHAP00000022047
Family with sequence similarity 135 member A.
      
 0.494
LOC105889441
Procollagen galactosyltransferase 2-like.
    
   0.475
ENSCHAP00000037047
annotation not available
    
   0.475
ENSCHAP00000044573
annotation not available
    
   0.475
cercam
Cerebral endothelial cell adhesion molecule.
    
   0.475
ENSCHAP00000055441
Collagen beta(1-O)galactosyltransferase 1.
    
   0.475
ENSCHAP00000061360
Collagen beta(1-O)galactosyltransferase 2.
    
   0.475
ENSCHAP00000018588
annotation not available
   
  0.437
ENSCHAP00000056433
Collagen, type VI, alpha 1.
   
  0.437
LOC105912056
Protein FAM78A-like.
  
 
   0.435
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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