STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zmat2Zinc finger matrin-type 2. (199 aa)    
Predicted Functional Partners:
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.999
ENSCHAP00000015367
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.999
mfap1
Microfibril associated protein 1.
   
 0.999
prpf38a
pre-mRNA processing factor 38A.
   
 0.998
ENSCHAP00000005016
Ribonuclease P/MRP 38 subunit.
    
 0.997
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.997
ENSCHAP00000015511
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
 0.997
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.997
sf3a2
Splicing factor 3a subunit 2.
   
 0.997
prpf31
pre-mRNA processing factor 31.
   
 0.997
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.