STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007690Transmembrane and coiled-coil domains 3. (727 aa)    
Predicted Functional Partners:
fancl
FA complementation group L.
     
 0.928
sord
Sorbitol dehydrogenase.
    
 0.852
LOC105908664
NAD(P)H dehydrogenase [quinone] 1-like.
  
 0.779
ENSCHAP00000039843
annotation not available
  
 0.779
ENSCHAP00000042137
annotation not available
  
 0.779
LOC105906643
Rhodopsin kinase-like.
 
   
  0.770
ENSCHAP00000011414
Transcription factor Dp-1, a.
 
    
 0.628
ENSCHAP00000009273
Ribosomal modification protein rimK-like family member A.
     
 0.624
ENSCHAP00000019940
Oculocutaneous albinism II.
     
 0.602
LOC105911164
G-protein-coupled receptor kinase 7A-like.
 
   
  0.596
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.