STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nclnNicalin. (577 aa)    
Predicted Functional Partners:
ccdc47
Coiled-coil domain containing 47.
    
 
 0.967
tmco1
Transmembrane and coiled-coil domains 1.
   
 
 0.960
tmem147
Transmembrane protein 147.
    
 
 0.954
rpl4
Ribosomal protein L4.
    
   0.895
rpl11
Ribosomal protein L11.
    
 
 0.868
sec61b
SEC61 translocon beta subunit.
    
   0.867
rpl27
Ribosomal protein L27.
    
   0.862
ENSCHAP00000005646
Ribosomal protein L23.
    
   0.862
rpl18a
Ribosomal protein L18a.
    
   0.862
rpl35
Ribosomal protein L35.
    
   0.862
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.