STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007825NEDD8 ubiquitin like modifier, like. (91 aa)    
Predicted Functional Partners:
rbx1
Ring-box 1.
   
 0.997
ENSCHAP00000022879
UBX domain protein 7.
    
 0.995
mysm1
Myb like, SWIRM and MPN domains 1.
   
 0.995
cul5
Cullin 5.
    
 0.994
cops5
COP9 signalosome subunit 5.
   
 0.994
ENSCHAP00000004468
Cullin 2.
    
 0.993
COPS6
COP9 signalosome subunit 6.
   
 0.992
ENSCHAP00000027667
Cullin 3a.
    
 0.992
ENSCHAP00000047548
Nedd8 activating enzyme E1 subunit 1.
   
 0.992
CUL1
Cullin 1.
    
 0.988
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.