Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bcap29B cell receptor associated protein 29. (238 aa)    
Predicted Functional Partners:
dus4l
Dihydrouridine synthase 4 like.
 
    
 0.951
ENSCHAP00000054780
Caspase 10, apoptosis-related cysteine peptidase.
    
 0.935
ENSCHAP00000000917
VAMP (vesicle-associated membrane protein)-associated protein A, like.
   
 0.890
VAPA
VAMP associated protein A.
   
 0.890
VAPB
VAMP associated protein B and C.
   
 0.888
pgrmc1
Progesterone receptor membrane component 1.
   
  0.857
ENSCHAP00000018648
SEC63 homolog, protein translocation regulator.
    
   0.844
ENSCHAP00000007291
annotation not available
    
 0.818
ENSCHAP00000045634
annotation not available
    
 0.818
ENSCHAP00000045687
annotation not available
    
 0.818
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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