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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000007888Transforming, acidic coiled-coil containing protein 1. (700 aa)    
Predicted Functional Partners:
ENSCHAP00000007914
annotation not available
 
  
 
 0.962
ENSCHAP00000032792
Transforming, acidic coiled-coil containing protein 3.
    
 
0.684
CKAP5
Cytoskeleton associated protein 5.
    
 
 0.655
ENSCHAP00000039177
Cytoskeleton associated protein 5.
    
 
 0.655
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.601
ENSCHAP00000062146
BRCA1 associated RING domain 1.
    
 0.597
ENSCHAP00000018333
annotation not available
    
 0.589
ENSCHAP00000000878
RAS-like, family 11, member B.
    
 0.570
ENSCHAP00000043072
Centrosomal protein 120.
    
 0.567
ENSCHAP00000002346
Mediator of cell motility 1.
   
  0.541
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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