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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
s1pr4Sphingosine-1-phosphate receptor 4. (386 aa)    
Predicted Functional Partners:
s1pr1
Sphingosine-1-phosphate receptor 1.
  
  
0.864
ENSCHAP00000000159
Sphingosine-1-phosphate receptor 5a.
     
0.837
LOC105910156
Sphingosine 1-phosphate receptor 1-like.
     
0.837
S1PR3
Sphingosine 1-phosphate receptor 3-like.
     
0.836
ENSCHAP00000007840
Sphingosine-1-phosphate receptor 3a.
  
  
0.778
LOC105899987
Guanine nucleotide-binding protein subunit alpha-13.
 
  
 0.752
LOC105888894
Guanine nucleotide-binding protein subunit alpha-13-like.
 
  
 0.752
ENSCHAP00000047858
annotation not available
 
  
 0.752
gna12
G protein subunit alpha 12.
 
  
 0.752
ENSCHAP00000016183
Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 3.
 
  
 0.685
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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