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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105908860Protein CutA homolog. (153 aa)    
Predicted Functional Partners:
ENSCHAP00000002781
Filamin binding LIM protein 1.
    
   0.636
ENSCHAP00000043471
Heat shock 10 protein 1.
     
 0.576
ENSCHAP00000045209
WASH complex subunit 4.
      
 0.529
ENSCHAP00000047901
Molybdenum cofactor synthesis 1.
     
 0.526
ENSCHAP00000040390
cutC copper transporter homolog (E. coli).
      
 0.521
umps
Uridine monophosphate synthetase.
    
  0.505
ENSCHAP00000054107
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
     
 0.451
ccs
Copper chaperone for superoxide dismutase.
      
 0.445
wdr46
WD repeat domain 46.
      
 0.430
pfdn6
Prefoldin subunit 6.
   
  
 0.426
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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