STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aampAngio associated migratory cell protein. (440 aa)    
Predicted Functional Partners:
LOC105890639
60S ribosomal protein L10.
    
 
 0.993
ENSCHAP00000011215
Glutamate-rich WD repeat containing 1.
   
  
 0.931
LOC105894852
Uncharacterized LOC105894852.
   
  
 0.910
tbxa2r
Thromboxane A2 receptor.
    
 0.894
hspbp1
HSPA (Hsp70) binding protein 1.
    
 
 0.881
ENSCHAP00000027592
SIL1 nucleotide exchange factor.
    
 
 0.881
mrpl16
Mitochondrial ribosomal protein L16.
    
 
 0.881
mrto4
MRT4 homolog, ribosome maturation factor.
   
 
 0.852
tbl3
Transducin beta like 3.
   
   
0.845
nmd3
NMD3 ribosome export adaptor.
   
  
 0.838
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.