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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atp23ATP23 metallopeptidase and ATP synthase assembly factor homolog. (234 aa)    
Predicted Functional Partners:
xrcc6
X-ray repair cross complementing 6.
    
 0.813
ENSCHAP00000001476
annotation not available
   
 
  0.794
ENSCHAP00000010458
DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae).
     
 0.781
ENSCHAP00000062455
Lysine (K)-specific demethylase 1a.
   
 
  0.776
ENSCHAP00000043674
mutS homolog 6 (E. coli).
   
 
  0.773
lig4
DNA ligase 4.
   
 
  0.773
ENSCHAP00000008863
Centrin 4.
   
 
  0.767
ENSCHAP00000003454
annotation not available
    
 
 0.746
mrpl20
Mitochondrial ribosomal protein L20.
   
    0.714
phb
Prohibitin.
    
 
 0.707
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.