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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008081annotation not available (354 aa)    
Predicted Functional Partners:
ENSCHAP00000040378
Ribosomal protein S3A.
   
  0.818
ENSCHAP00000017321
DEAH (Asp-Glu-Ala-His) box polypeptide 29.
   
 0.806
ENSCHAP00000059861
DEAH (Asp-Glu-Ala-His) box helicase 9.
    
 0.796
LOC105903695
40S ribosomal protein S5.
     
 0.789
nufip2
Nuclear FMR1 interacting protein 2.
   
 
 0.787
rps9
Ribosomal protein S9.
     
 0.784
rps11
Ribosomal protein S11.
    
  0.782
rps3
Ribosomal protein S3.
     
 0.781
rps16
Ribosomal protein S16.
    
  0.779
ENSCHAP00000009605
La ribonucleoprotein 1B.
   
 0.748
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.