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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008137Spindle and kinetochore associated complex subunit 3. (600 aa)    
Predicted Functional Partners:
ska1
Spindle and kinetochore associated complex subunit 1.
   
 0.998
ENSCHAP00000046868
NDC80 kinetochore complex component.
   
 
 0.978
cenpf
Centromere protein F.
   
 
 0.962
nup133
Nucleoporin 133.
   
 0.949
ENSCHAP00000027765
Spindle apparatus coiled-coil protein 1.
   
 
  0.933
bod1
Biorientation of chromosomes in cell division 1.
   
 
 0.923
ENSCHAP00000049093
annotation not available
   
 0.922
ENSCHAP00000058921
BUB1 mitotic checkpoint serine/threonine kinase Bb.
   
 0.922
ENSCHAP00000038482
Ttk protein kinase.
   
  
 0.905
nuf2
NUF2 component of NDC80 kinetochore complex.
   
  
 0.884
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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