STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008173Dihydrodiol dehydrogenase (dimeric), like. (335 aa)    
Predicted Functional Partners:
galk2
Galactokinase 2.
  
 0.848
galk1
Galactokinase 1.
  
 0.848
ENSCHAP00000043293
Myo-inositol oxygenase.
   
 
 0.794
gale
UDP-galactose-4-epimerase.
  
 
 0.779
LOC105903492
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like.
  
  
 
0.773
sord
Sorbitol dehydrogenase.
 
 
 0.764
ENSCHAP00000029605
lysyl-tRNA synthetase 1.
  
    0.753
ENSCHAP00000038384
annotation not available
  
 0.748
galm
Galactose mutarotase.
  
 
 0.729
ENSCHAP00000050918
annotation not available
  
 
 0.727
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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