STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008176annotation not available (900 aa)    
Predicted Functional Partners:
LOC105895537
Eukaryotic initiation factor 4A-I-like.
   
 0.916
eif4a2
Eukaryotic translation initiation factor 4A2.
   
 0.916
LOC105910017
Eukaryotic translation initiation factor 4E-like.
   
 0.914
eif4e3
Eukaryotic translation initiation factor 4E family member 3.
   
 0.909
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.896
ncbp2
Nuclear cap binding protein subunit 2.
    
 0.878
ENSCHAP00000005173
annotation not available
   
 0.862
LOC105908755
Eukaryotic translation initiation factor 4E-1A.
   
 0.862
ENSCHAP00000035201
Eukaryotic translation initiation factor 4eb.
   
 0.862
pabpc1
poly(A) binding protein cytoplasmic 1.
   
 0.854
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.