STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008191Glutamate receptor, ionotropic, kainate 1b. (908 aa)    
Predicted Functional Partners:
ENSCHAP00000028436
annotation not available
  
 
0.815
ENSCHAP00000058480
Si:ch211-264f5.8.
  
 
0.813
grik4
Glutamate ionotropic receptor kainate type subunit 4.
  
 
0.812
ENSCHAP00000027640
annotation not available
   
 0.722
SCN4B
Sodium voltage-gated channel beta subunit 4.
     
 0.704
ENSCHAP00000026254
Sodium channel, voltage-gated, type III, beta.
   
 
 0.695
cacng3
Calcium voltage-gated channel auxiliary subunit gamma 3.
     
 0.687
ENSCHAP00000047252
Sodium channel, voltage-gated, type II, beta.
   
 
  0.673
ENSCHAP00000061965
Glutamate receptor, ionotropic, AMPA 2a.
  
0.669
gria2
Glutamate ionotropic receptor AMPA type subunit 2.
  
0.668
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.