STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008230Ankyrin repeat and EF-hand domain containing 1b. (637 aa)    
Predicted Functional Partners:
ENSCHAP00000026729
Radial spoke head 14 homolog.
   
  0.782
tsnaxip1
Translin associated factor X interacting protein 1.
   
  0.776
ENSCHAP00000011297
Cilia and flagella associated protein 99.
   
  0.773
LOC105895390
Radial spoke head protein 6 homolog A-like.
   
   0.730
ENSCHAP00000033889
F-box protein 36b.
   
 
  0.717
ENSCHAP00000039171
Coiled-coil domain containing 65.
   
    0.707
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.676
ENSCHAP00000003370
annotation not available
   
   0.648
ENSCHAP00000003390
Tektin 3.
   
   0.648
ENSCHAP00000054511
annotation not available
   
   0.648
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.