STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105895561Transcription factor Sox-19b-like. (293 aa)    
Predicted Functional Partners:
LOC105912643
POU domain, class 5, transcription factor 1-like.
    
 0.930
ENSCHAP00000025324
annotation not available
    
 0.712
CTNNB1
Catenin beta 1.
    
 0.712
ENSCHAP00000000706
Spalt-like transcription factor 4.
   
 0.657
ENSCHAP00000010671
Junction plakoglobin a.
    
 0.633
ENSCHAP00000030901
Junction plakoglobin b.
    
 0.633
ube2i
Ubiquitin conjugating enzyme E2 I.
    
   0.584
LOC105890774
SUMO-conjugating enzyme UBC9-like.
    
   0.584
ENSCHAP00000045841
PR domain containing 14.
    
 0.570
ENSCHAP00000010150
POU class 2 homeobox 3.
   
 0.563
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.