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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008318Chromosome 5 open reading frame 22. (447 aa)    
Predicted Functional Partners:
LIX1L
Limb and CNS expressed 1 like.
   
 0.741
ENSCHAP00000045309
Limb and CNS expressed 1.
   
 0.741
ENSCHAP00000005644
Four-jointed box kinase 1.
   
 0.719
FJX1
Four-jointed box protein 1-like.
   
 0.719
LOC105909040
Chromosome unknown open reading frame, human C1orf109.
   
    0.718
ENSCHAP00000007525
CWC25 spliceosome associated protein homolog.
   
    0.713
ENSCHAP00000016641
Arginine-glutamic acid dipeptide (RE) repeats b.
    
 0.614
ENSCHAP00000027466
Atrophin 1.
    
 0.614
ENSCHAP00000062155
Arginine-glutamic acid dipeptide (RE) repeats a.
    
 0.614
ENSCHAP00000000567
annotation not available
   
    0.597
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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