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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105892964Actin, alpha cardiac muscle 1. (377 aa)    
Predicted Functional Partners:
tpm4
Tropomyosin 4.
   
 0.934
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.934
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
 0.927
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
 0.927
dctn2
Dynactin subunit 2.
   
 0.901
ENSCHAP00000011376
Actin related protein 10.
    
0.897
ENSCHAP00000041443
Troponin T2c, cardiac.
   
 0.897
LOC105896158
Tropomyosin alpha-3 chain.
   
 0.894
ENSCHAP00000042650
Tropomyosin 3.
   
 0.894
LOC105913318
Tropomyosin alpha-1 chain.
   
 0.894
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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