STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008564Zmp:0000000846. (2208 aa)    
Predicted Functional Partners:
ENSCHAP00000027714
Aggrecan b.
   
 0.910
ENSCHAP00000029990
Aggrecan a.
   
 0.910
ENSCHAP00000023876
Protein tyrosine phosphatase receptor type Z1b.
   
   0.883
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
    
 0.857
ENSCHAP00000011380
Brevican.
   
 0.803
ENSCHAP00000036670
Versican a.
   
 0.742
ENSCHAP00000036715
annotation not available
   
 0.742
ENSCHAP00000041015
annotation not available
   
 0.742
itgb5
Integrin subunit beta 5.
    
 0.666
ENSCHAP00000021013
Integrin beta 3a.
    
 0.666
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.