Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008570annotation not available (413 aa)    
Predicted Functional Partners:
ENSCHAP00000004681
annotation not available
   
 0.806
ENSCHAP00000012618
annotation not available
  
 0.602
LOC105900004
Acyl carrier protein, mitochondrial-like.
  
 0.602
ENSCHAP00000008049
enoyl-CoA delta isomerase 2.
   
 0.569
cryl1
Crystallin lambda 1.
  
 0.557
ENSCHAP00000024533
annotation not available
  
 0.551
ASF1B
Anti-silencing function 1B histone chaperone.
    
 0.542
sord
Sorbitol dehydrogenase.
  
 
 0.536
stoml1
Stomatin like 1.
  
 0.531
ENSCHAP00000012212
triokinase/FMN cyclase.
    
 0.529
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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