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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgpl1Sphingosine-1-phosphate lyase 1. (599 aa)    
Predicted Functional Partners:
ENSCHAP00000008396
Sphingosine-1-phosphate phosphatase 1.
    
 0.963
LOC105897768
Sphingosine-1-phosphate phosphatase 1-like.
    
 0.963
SGPP2
Sphingosine-1-phosphate phosphatase 2.
    
 0.963
med18
Mediator complex subunit 18.
    
 0.945
LOC105900204
4-aminobutyrate aminotransferase, mitochondrial-like.
  
 0.942
abat
4-aminobutyrate aminotransferase.
  
 0.942
ENSCHAP00000022172
Aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase).
   
 0.941
med6
Mediator complex subunit 6.
    
 0.939
med23
Mediator complex subunit 23.
     
 0.935
ENSCHAP00000048371
Mediator complex subunit 14.
     
 0.935
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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