STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008656annotation not available (192 aa)    
Predicted Functional Partners:
vps28
VPS28 subunit of ESCRT-I.
   
 0.984
ENSCHAP00000048636
annotation not available
    
 0.975
VPS37B
VPS37B subunit of ESCRT-I.
    
 0.974
tm9sf1
Transmembrane 9 superfamily member 1.
   
 0.963
LOC105892612
Vacuolar protein sorting-associated protein 37A-like.
   
 0.956
rps27a
Ribosomal protein S27a.
    
 0.949
ENSCHAP00000030291
Ubiquitin B.
    
  0.948
ENSCHAP00000030857
annotation not available
    
 0.940
LOC105889218
Vacuolar protein sorting-associated protein 37B-like.
    
 0.938
LOC105900785
Ubiquitin-conjugating enzyme E2 variant 3-like.
   
 
0.937
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.