STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008676N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a. (999 aa)    
Predicted Functional Partners:
LOC105906560
D-glucuronyl C5-epimerase-like.
   
 0.897
ENSCHAP00000041447
Glucuronic acid epimerase a.
   
 0.865
ENSCHAP00000044478
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2b.
  
  
 
0.772
ENSCHAP00000015188
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1b.
  
  
 
0.699
ENSCHAP00000056014
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3.
  
  
 
0.699
ENSCHAP00000052398
annotation not available
     
 0.679
ENSCHAP00000060019
annotation not available
     
 0.556
ENSCHAP00000019214
Glypican 5c.
    
 0.535
ENSCHAP00000020067
Glypican 3.
    
 0.535
ENSCHAP00000054309
Glypican 5a.
    
 0.535
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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