STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105892948Syntaxin-binding protein 6-like. (281 aa)    
Predicted Functional Partners:
ENSCHAP00000001644
annotation not available
    
 0.863
prkci
Protein kinase C iota.
    
 0.863
exoc4
Exocyst complex component 4.
    
 0.847
ENSCHAP00000024034
Exocyst complex component 1.
    
0.808
ENSCHAP00000046823
Si:dkey-245p14.4.
    
 0.787
STX19
Syntaxin 19.
    
 0.784
ENSCHAP00000024103
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
  0.781
ENSCHAP00000053656
annotation not available
  
 
 0.777
ENSCHAP00000032485
Exocyst complex component 5.
    
 0.774
ENSCHAP00000029050
annotation not available
   
 
  0.770
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.