STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000008773WD repeat domain 37. (572 aa)    
Predicted Functional Partners:
ENSCHAP00000017412
Intraflagellar transport 140 homolog (Chlamydomonas).
    
 0.864
ENSCHAP00000014064
Phosphofurin acidic cluster sorting protein 2.
    
 
 0.853
ENSCHAP00000011249
annotation not available
    
 
 0.813
mad2l1
Mitotic arrest deficient 2 like 1.
   
 0.813
ENSCHAP00000033527
annotation not available
    
 
 0.813
ENSCHAP00000040970
annotation not available
    
 
 0.813
ENSCHAP00000057889
Phosphofurin acidic cluster sorting protein 1a.
    
 
 0.813
ENSCHAP00000048221
WD repeat domain 82.
    
 0.803
ENSCHAP00000014898
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.801
tex10
Testis expressed 10.
   
 0.799
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.