Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC105890808Polymerase I and transcript release factor-like. (448 aa)    
Predicted Functional Partners:
CAV3
Caveolin 3.
   
 0.970
LOC105910302
Caveolin-1-like.
   
 0.970
ENSCHAP00000055532
annotation not available
   
 0.905
LOC105896662
Serum deprivation-response protein-like.
   
 
 0.853
ENSCHAP00000020497
Caveolae associated protein 2a.
   
 
 0.853
ENSCHAP00000018350
annotation not available
   
 0.829
ENSCHAP00000026035
Zgc:158296.
   
 0.774
LOC105897959
Caveolin-2-like.
   
 0.774
ENSCHAP00000026055
Anillin, actin binding protein.
    
  0.771
ENSCHAP00000029913
Si:dkey-30c15.10.
    
  0.771
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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