STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009019annotation not available (376 aa)    
Predicted Functional Partners:
ENSCHAP00000007633
OTU deubiquitinase, ubiquitin aldehyde binding 1b.
    
 0.891
ENSCHAP00000054945
Ubiquitin specific peptidase 8.
    
 0.785
LOC105907815
Ubiquitin carboxyl-terminal hydrolase 2-like.
    
 0.688
ENSCHAP00000038282
Ubiquitin specific peptidase 2b.
    
 0.688
ENSCHAP00000037383
Ubiquitin specific peptidase 21.
    
 0.667
ENSCHAP00000030857
annotation not available
    
  0.649
rps27a
Ribosomal protein S27a.
    
  0.649
ENSCHAP00000047219
Retinal outer segment membrane protein 1a.
    
 
 0.609
ENSCHAP00000007121
Ring finger protein 150a.
   
0.605
rnf130
Ring finger protein 130.
   
0.605
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.