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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105906223Gap junction beta-2 protein-like. (276 aa)    
Predicted Functional Partners:
gja1
Gap junction protein alpha 1.
    
0.966
LOC105913257
Gap junction beta-2 protein-like.
  
  
0.963
LOC105895695
Gap junction beta-3 protein-like.
  
 
0.942
ENSCHAP00000032406
Connexin 34.5.
  
 
0.937
ENSCHAP00000007085
annotation not available
  
  
0.936
gjc2
Gap junction protein gamma 2.
     
0.935
ENSCHAP00000029018
annotation not available
  
 
0.930
ENSCHAP00000022703
annotation not available
     
0.929
LOC105895699
Gap junction epsilon-1 protein-like.
     
0.928
LOC105888748
Uncharacterized LOC105888748.
     
 0.927
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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