STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000009155Si:ch211-286b5.4. (446 aa)    
Predicted Functional Partners:
ENSCHAP00000011007
Afadin, adherens junction formation factor a.
    
  0.862
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.736
ENSCHAP00000026154
annotation not available
    
  0.577
trmt112
tRNA methyltransferase subunit 11-2.
   
 
 0.560
ENSCHAP00000051830
annotation not available
   
 
  0.521
rnaset2
Ribonuclease T2.
      
 0.520
med6
Mediator complex subunit 6.
   
 
  0.520
ENSCHAP00000041317
Si:dkey-70p6.1.
  
     0.449
ENSCHAP00000004481
annotation not available
  
  
 0.420
ENSCHAP00000053521
8-oxoguanine DNA glycosylase.
     
 0.420
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.