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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105903122RNA-binding protein 4.1-like. (354 aa)    
Predicted Functional Partners:
LOC105890375
Heterogeneous nuclear ribonucleoprotein K-like.
   
 0.783
ENSCHAP00000054417
Heterogeneous nuclear ribonucleoprotein K.
   
 0.783
srsf1
Serine and arginine rich splicing factor 1.
   
 
0.672
runx2
RUNX family transcription factor 2.
    
  0.671
ENSCHAP00000021090
RUNX family transcription factor 2b.
    
  0.671
LOC105896069
Runt-related transcription factor 3-like.
    
  0.671
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
   0.654
ENSCHAP00000043344
annotation not available
   
 
 0.633
LOC105901871
TAR DNA-binding protein 43-like.
   
 
 0.624
ENSCHAP00000003791
annotation not available
   
 0.584
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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