STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105903121RNA-binding protein 4.1-like. (406 aa)    
Predicted Functional Partners:
eif2a
Eukaryotic translation initiation factor 2A.
   
    0.685
LOC105890375
Heterogeneous nuclear ribonucleoprotein K-like.
   
 0.665
ENSCHAP00000054417
Heterogeneous nuclear ribonucleoprotein K.
   
 0.665
traf2
TNF receptor associated factor 2.
    
  0.628
runx2
RUNX family transcription factor 2.
    
  0.591
ENSCHAP00000021090
RUNX family transcription factor 2b.
    
  0.591
LOC105896069
Runt-related transcription factor 3-like.
    
  0.591
ENSCHAP00000034739
Cold inducible RNA binding protein a.
  
  0.558
ENSCHAP00000003791
annotation not available
   
0.546
ENSCHAP00000003801
annotation not available
   
0.546
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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